5-ETHYNYL-2'-DEOXYURIDINE
Synonym(s):EdU
- CAS NO.:61135-33-9
- Empirical Formula: C11H12N2O5
- Molecular Weight: 252.22
- MDL number: MFCD01675687
- EINECS: 500-100-4
- SAFETY DATA SHEET (SDS)
- Update Date: 2026-02-03 17:51:38
What is 5-ETHYNYL-2'-DEOXYURIDINE?
Description
5-Ethynyl-2′-deoxyuridine (61135-33-9) is a novel agent for fast and sensitive detection of DNA synthesis?in vivo.1 5-EdU is incorporated into proliferating cells followed by detection with a fluorescent azide using click ligation.1 In contrast to the use of BrdU, the new method does not require sample fixation or DNA denaturation. 5-Ethynyl-2′-deoxyuridine may be used for studying cell proliferation in the central nervous system and may be combined with BrdU staining in a novel protocol allowing for double labeling of DNA synthesis.2
The Uses of 5-ETHYNYL-2'-DEOXYURIDINE
5-Ethynyl-2’deoxyuridine is a extensively used nucleoside analog used as a probe for DNA synthesis. However, 5-Ethynyl-2’deoxyuridine is a toxic anti-metabolite, which potentially causes DNA instabi liy, necrosis and cell-cycle arrest, therefore it is often used for short-term DNA synthesis in tissue culture and living organisms where prolonged cell survival is not required.
The Uses of 5-ETHYNYL-2'-DEOXYURIDINE
5-Ethynyl-2′-deoxyuridine (EdU) is a thymidine analog that can be incorporated into replicating DNA for detection of cell proliferation. It has an alkyne handle that can ligate with azide-containing fluorescent probes through a highly efficient click chemistry reaction. EdU nucleoside can be incorporated into the DNA of cells either in culture or in animals without showing significant toxicity. The assay offers a simpler workflow for detecting cell proliferation than anti-BrdU assays.
For information on Baseclick kits containing all the reagents for the assays see: Baseclick kits
For a listing of the Baseclick kits see: Baseclick kits
What are the applications of Application
5-Ethynyl-2′-deoxyuridine is a nucleoside analog of thymidine, that is often used for short-term DNA synthesis in tissue culture
Storage
Store at -20°C
References
1) Salic and Mitchison (2008),?A chemical method for fast and sensitive detection of DNA synthesis in vivo; Proc. Natl. Acad. Sci. USA,?105?2415 2) Zeng?et al. (2010),?Evaluation of 5-ethynyl-2′-deoxyuridine staining as a sensitive and reliable method for studying cell proliferation in the adult nervous system; Brain Res.,?1319C?21
Properties of 5-ETHYNYL-2'-DEOXYURIDINE
| Melting point: | 199°C(lit.) |
| Density | 1.55±0.1 g/cm3(Predicted) |
| storage temp. | -20°C |
| solubility | Soluble in DMSO (up to 10 mg/ml). |
| pka | 8.29±0.10(Predicted) |
| form | powder |
| color | White or off-white |
| Stability: | Stable for 1 year from date of purchase as supplied. Solutions in DMSO may be stored at -20° for up to 2 months. |
| CAS DataBase Reference | 61135-33-9 |
Safety information for 5-ETHYNYL-2'-DEOXYURIDINE
| Signal word | Danger |
| Pictogram(s) |
![]() Health Hazard GHS08 |
| GHS Hazard Statements |
H340:Germ cell mutagenicity H361:Reproductive toxicity |
| Precautionary Statement Codes |
P201:Obtain special instructions before use. P308+P313:IF exposed or concerned: Get medical advice/attention. |
Computed Descriptors for 5-ETHYNYL-2'-DEOXYURIDINE
| InChIKey | CDEURGJCGCHYFH-DJLDLDEBSA-N |
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